> **The New Era of Research Tools** — From Passive Chat to Autonomous Research Workflows — https://www.pirahansiah.com/notes/slides/research-tools/
> Presentation: the modern research stack — Hermes Agent, LeapSpace, PaperBanana, AI citation finders, agent swarms, peer review, and your Obsidian second brain.

*Last updated: 2026-09-06.*

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      <section>
        <span class="tag">RESEARCH TOOLS · 2026</span>
        <h1>The New Era of Research Tools</h1>
        <h2>From Passive Chat to Autonomous Research Workflows</h2>
        <div class="strip">
          <div class="metric"><div class="n b">16</div><div class="l">Hermes research skills</div></div>
          <div class="metric"><div class="n p">6+</div><div class="l">AI citation finders</div></div>
          <div class="metric"><div class="n g">99%</div><div class="l">token reduction possible</div></div>
          <div class="metric"><div class="n o">∞</div><div class="l">parallel subagents</div></div>
        </div>
        <p style="color:#94a3b8; margin-top:1em; font-size: 0.9em;">
          <strong>Dr. Farshid Pirahansiah</strong><br>
          <span style="color:#38bdf8;">AI & Computer Vision Engineer • pirahansiah.com</span>
        </p>
      </section>

      
      <section>
        <h2>The Shift: Old vs New Research Stack</h2>
        <div class="era">
          <div class="c">
            <h3 style="color:#f87171;">📚 The Old Way</h3>
            <p>• Manual literature reading, 10,000+ papers/year.</p>
            <p>• Copy-paste BibTeX, broken repos, grep-the-whole-repo.</p>
            <p>• Passive chatbot that forgets context.</p>
            <p>• Write abstract → intro → methods (wrong order).</p>
          </div>
          <div class="arrow">➜</div>
          <div class="c cyan">
            <h3 style="color:#34d399;">🤖 The New Era</h3>
            <p>• Autonomous agents sweep, reproduce, draft.</p>
            <p>• Verifiable citation finders, zero hallucinated refs.</p>
            <p>• Persistent memory + reusable skills.</p>
            <p>• Paper drafted methods → abstract (evidence-first).</p>
          </div>
        </div>
        <p style="margin-top:0.8em; color:#cbd5e1;">Tools now <em>act</em>, not just answer. The researcher directs; the stack executes.</p>
      </section>

      
      <section>
        <h2>The Modern Research Toolbox</h2>
        <div class="m-3">
          <div class="c cyan c-left">
            <h3 style="color:#22D3EE;">🛠️ Orchestration</h3>
            <p>• <strong>Hermes Agent</strong> — terminal + skills + subagents.</p>
            <p>• <strong>Google Opal</strong> [Experiment] — AI app builder (sign-in).</p>
            <p>• <strong>Agent swarms</strong> (kimi.com → fan-out) for parallel sweeps.</p>
          </div>
          <div class="c c-left">
            <h3 style="color:#30D158;">🖼️ Insight & Illustration</h3>
            <p>• <strong>LeapSpace</strong> (Elsevier) — Deep Research + Trust Cards.</p>
            <p>• <strong>PaperBanana</strong> — text-to-figure diagrams & charts.</p>
            <p>• <strong>Atlas</strong> — query your own library with cited passages.</p>
          </div>
          <div class="c glow c-left">
            <h3 style="color:#A855F7;">📑 Citations & KB</h3>
            <p>• <strong>Sourcely / Citely / Paperpal</strong> — find & verify refs.</p>
            <p>• <strong>Scite</strong> — support / challenge / mention labels.</p>
            <p>• <strong>Obsidian</strong> — your second brain, agent-editable.</p>
          </div>
        </div>
        <p style="margin-top:0.7em; font-size:0.76em; color:#94a3b8;">Hermes ties them together: <code>deepdive</code> ≈ Deep Research · <code>factcheck</code> ≈ Trust Cards · <code>cite</code> ≈ citation finders · <code>obsidian</code> ≈ second brain.</p>
      </section>

      
      <section>
        <h2>Hermes Research Skills Catalog</h2>
        <p style="font-size:0.7em; color:#94a3b8; text-align:center;">8 new research skills + 8 existing — literature sweeps, critique, synthesis & citation.</p>
        <div style="width:96%; max-height:62vh; overflow-y:auto; font-size:0.5em; margin:0.3em auto;">
          <table style="width:100%; border-collapse:collapse; color:#cbd5e1;">
            <thead>
              <tr style="color:#22D3EE; text-align:left;">
                <th style="padding:3px 8px; border-bottom:1px solid rgba(34,211,238,0.5);">Skill</th>
                <th style="padding:3px 8px; border-bottom:1px solid rgba(34,211,238,0.5);">Trigger / what it does</th>
                <th style="padding:3px 8px; border-bottom:1px solid rgba(34,211,238,0.5);">Status</th>
              </tr>
            </thead>
            <tbody>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>deepdive</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Deep multi-source investigation; cited synthesis with confidence + disagreement mapping</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><span class="tag">NEW</span></td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>researchgap</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Finds gaps, contradictions & open problems in a topic's literature; proposes research questions</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><span class="tag">NEW</span></td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>critic</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Rigorous critique of a paper/claim/argument with severity-rated weaknesses + verdict</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><span class="tag">NEW</span></td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>literature-review</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Themed survey of a topic with annotated bibliography</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><span class="tag">NEW</span></td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>synthesise</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Merges several sources into one attributed synthesis; flags consensus vs open questions</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><span class="tag">NEW</span></td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>factcheck</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Verifies claims against sources; labels each supported/contradicted/unverifiable</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><span class="tag">NEW</span></td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>question-storm</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Generates diverse, prioritized research questions across levels</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><span class="tag">NEW</span></td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>cite</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Formats references in a citation style (APA/MLA/IEEE/BibTeX); finds real sources</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><span class="tag">NEW</span></td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>arxiv</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Search arXiv papers by keyword/author/category</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">existing</td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>llm-wiki</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Build/query interlinked markdown knowledge base</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">existing</td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>grounded-citations</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Ground answers in cited verifiable sources</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">existing</td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>reference-curation</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Audit/curate doc reference links</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">existing</td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>polymarket</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Query Polymarket markets/prices</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">existing</td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>competitor-news-monitor</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Watch companies for material news</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">existing</td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>blogwatcher</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Monitor blogs/RSS feeds</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">existing</td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><code>research-paper-writing</code></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Authoring structure for research papers</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">existing</td></tr>
            </tbody>
          </table>
        </div>
      </section>

      
      <section>
        <h2>LeapSpace &amp; Your Research Profile</h2>
        <p style="font-size:0.66em; color:#94a3b8; text-align:center;">Elsevier's research-grade AI workspace (Scopus data) — and the author record it surfaces.</p>
        <div class="m-2">
          <div class="c c-left">
            <h3 style="color:#22D3EE;">🪐 LeapSpace (Elsevier)</h3>
            <p>• AI workspace powered by <strong>Scopus</strong> + Elsevier full-text.</p>
            <p>• <strong>Deep Research</strong> reports: patterns, contradictions, evidence gaps.</p>
            <p>• <strong>Trust Cards</strong> + <strong>Claim Radar</strong>: sources &amp; contradictions shown.</p>
            <p>• <strong>Writing Coach</strong>, Funding Scout, Author Search, collaborators.</p>
            <p>• <a href="https://researcher.elsevier.com/eur/" style="color:#38bdf8; text-decoration:underline;">researcher.elsevier.com/eur</a></p>
          </div>
          <div class="c c-left">
            <h3 style="color:#A855F7;">👤 Farshid Pirahansiah — Scopus</h3>
            <p>• <strong>h-index 6</strong> · <strong>12 publications</strong> · <strong>73 citations</strong></p>
            <p>• Affiliation: Center for AI Technology, Bangi, Malaysia.</p>
            <p>• Active years: 2010–2022.</p>
            <p>• Topics: camera calibration, robot localization, image segmentation, OCR, license-plate recognition.</p>
            <p>• Profile generated by LeapSpace, Sun Sep 06 2026.</p>
          </div>
        </div>
        <p style="margin-top:0.5em; font-size:0.72em; color:#94a3b8;">Hermes mapping: <code>deepdive</code>/<code>literature-review</code> ≈ Deep Research · <code>grounded-citations</code>/<code>factcheck</code> ≈ Trust Cards/Claim Radar · <code>cite</code> ≈ Author Search.</p>
      </section>

      
      <section>
        <h2>PaperBanana: Automating Academic Illustration</h2>
        <p style="font-size:0.68em; color:#94a3b8; text-align:center;">Text-to-figure AI for researchers — publication-ready diagrams & charts from a description.</p>
        <div class="m-2">
          <div class="c c-left">
            <h3 style="color:#22D3EE;">🔧 What it does</h3>
            <p>• <strong>Methodology diagrams</strong> — model architectures, algorithm flows, encoders, system pipelines.</p>
            <p>• <strong>Statistical plots</strong> — generates executable <strong>Matplotlib code</strong> from raw data (no numeric hallucination).</p>
            <p>• <strong>Aesthetic enhancement</strong> — turns hand sketches / whiteboard notes into top-venue art.</p>
            <p>• <strong>Styles</strong> — Transformer, GAN, RAG, Multi-Agent templates; posters & more.</p>
          </div>
          <div class="c c-left">
            <h3 style="color:#A855F7;">🤖 How it works</h3>
            <p>• <strong>5-agent closed loop</strong> (Planner → Visualizer → …) for faithful, precise, polished figures.</p>
            <p>• <strong>Planner</strong> turns text into structured visual layouts.</p>
            <p>• <strong>Visualizer</strong> renders via Nano-Banana-Pro — exact shapes, connectors, icons.</p>
            <p>• <strong>Trusted by</strong> SNU, Stanford, UC Berkeley, CMU, Tsinghua, SJTU, Yonsei, IIT Madras, Monash, Broad Institute.</p>
          </div>
        </div>
        <p style="margin-top:0.5em; font-size:0.74em; color:#94a3b8;">Example: prompt <em>"encoder–decoder segmentation pipeline with skip connections"</em> → ready architecture diagram in seconds. Reference: <a href="https://paper-banana.org" style="color:#38bdf8; text-decoration:underline;">paper-banana.org</a></p>
      </section>

      
      <section>
        <h2>Best Reference Finder — AI Citation Tools</h2>
        <p style="font-size:0.66em; color:#94a3b8; text-align:center;">Dedicated finders query Crossref / Semantic Scholar — no hallucinated refs like chatbots.</p>
        <div style="width:97%; max-height:58vh; overflow-y:auto; font-size:0.5em; margin:0.3em auto;">
          <table style="width:100%; border-collapse:collapse; color:#cbd5e1;">
            <thead>
              <tr style="color:#22D3EE; text-align:left;">
                <th style="padding:3px 8px; border-bottom:1px solid rgba(34,211,238,0.5);">Tool</th>
                <th style="padding:3px 8px; border-bottom:1px solid rgba(34,211,238,0.5);">Best for</th>
                <th style="padding:3px 8px; border-bottom:1px solid rgba(34,211,238,0.5);">Standout</th>
                <th style="padding:3px 8px; border-bottom:1px solid rgba(34,211,238,0.5);">Styles</th>
              </tr>
            </thead>
            <tbody>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><a href="https://www.sourcely.net/" style="color:#38bdf8;">Sourcely</a></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Bulk / paragraph</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Scans essays, highlights text needing support, summaries</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">700+ (BibTeX, RIS)</td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><a href="https://citely.ai/citation-finder" style="color:#38bdf8;">Citely AI</a></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Claim verification</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Paste claim → matched to verified DOIs</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">APA, MLA</td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><a href="https://www.grammarly.com/ai-agents/citation-finder" style="color:#38bdf8;">Grammarly</a></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">In-line writing</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Flags missing sources in editor, inserts citations</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">APA, MLA, Chicago</td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><a href="https://paperpal.com/tools/citation-generator" style="color:#38bdf8;">Paperpal</a></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">MS Word flow</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">250M+ articles, search by title/DOI</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">10,000+</td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><a href="https://scispace.com/agents/citation-finder-6ewdpowc" style="color:#38bdf8;">SciSpace</a></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Partial metadata</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Broken URL/author → complete citation</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">BibTeX, RIS, CSV</td></tr>
              <tr><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);"><a href="https://writeless.ai/ai-reference-finder" style="color:#38bdf8;">Writeless</a></td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">PDF uploads</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">Filter by min year, inline insertion</td><td style="padding:3px 8px; border-bottom:1px solid rgba(148,163,184,0.12);">APA, MLA, Harvard…</td></tr>
            </tbody>
          </table>
        </div>
        <p style="margin-top:0.4em; font-size:0.7em; color:#94a3b8;">Beyond find: <strong>Scite</strong> labels citations support/challenge/mention · <strong>Google Scholar</strong> (free, manual) · <strong>Consensus</strong> (Consensus Meter) · manage with <strong>Zotero / Mendeley / <a href="https://www.mybib.com/" style="color:#38bdf8;">MyBib</a></strong>. Hermes: <code>cite</code> formats, <code>factcheck</code> verifies, <code>grounded-citations</code> grounds.</p>
      </section>

      
      <section>
        <h2>How to Write a Paper — Write in This Order</h2>
        <p style="font-size:0.7em; color:#94a3b8; text-align:center;">Draft bottom-up: build the evidence first, then frame it. Read top-down.</p>
        <ol style="text-align:left; max-width:860px; margin:0.5em auto; font-size:0.82em; line-height:1.6; color:#cbd5e1;">
          <li style="margin:0.25em 0;"><strong style="color:#22D3EE;">1 · Methods</strong> — Lock the protocol, setup, datasets & metrics. The foundation everything cites.</li>
          <li style="margin:0.25em 0;"><strong style="color:#22D3EE;">2 · Results</strong> — Report what happened, raw: numbers, curves, observed behaviour.</li>
          <li style="margin:0.25em 0;"><strong style="color:#22D3EE;">3 · Figures</strong> — Build the visuals: plots, diagrams, architecture art. One idea each.</li>
          <li style="margin:0.25em 0;"><strong style="color:#22D3EE;">4 · Tables</strong> — Assemble comparison/benchmark tables; numbers must match figures.</li>
          <li style="margin:0.25em 0;"><strong style="color:#A855F7;">5 · Discussion</strong> — Interpret: why it works, limits, implications, relation to prior work.</li>
          <li style="margin:0.25em 0;"><strong style="color:#A855F7;">6 · Introduction</strong> — Open with the gap & motivation; now you know what you proved.</li>
          <li style="margin:0.25em 0;"><strong style="color:#34d399;">7 · Abstract</strong> — Written last: the 200-word distillation of the finished paper.</li>
        </ol>
        <p style="margin-top:0.5em; font-size:0.74em; color:#94a3b8;">Hermes: <code>researchgap</code> scopes the gap · <code>critic</code> stress-tests claims · <code>cite</code> formats refs · <code>research-paper-writing</code> structures the draft.</p>
      </section>

      
      <section>
        <h2>Agent Swarms: Parallel Research at Scale</h2>
        <p style="font-size:0.68em; color:#94a3b8; text-align:center;">One orchestrator fans out to many specialized workers, then merges results.</p>
        <div class="m-2">
          <div class="c c-left">
            <h3 style="color:#22D3EE;">🐝 How a swarm runs</h3>
            <p>• <strong>Orchestrator</strong> splits the task into independent sub-goals.</p>
            <p>• <strong>Swarm</strong> = N parallel subagents, each with its own context & tools.</p>
            <p>• <strong>Merge</strong>: results aggregated, deduplicated, cross-checked.</p>
            <p>• <strong>Hermes</strong>: <code>delegate_task</code> spawns concurrent workers (no shared context bloat).</p>
          </div>
          <div class="c c-left">
            <h3 style="color:#A855F7;">🌊 Example: kimi.com → swarm</h3>
            <p>1. <strong>kimi.com</strong> receives the research question (e.g. "compare 2025 VLM agents").</p>
            <p>2. <strong>→ swarm</strong>: fans out to subagents — ArXiv sweep, benchmark mining, repo cloning.</p>
            <p>3. <strong>→ …</strong>: each worker returns findings; orchestrator synthesizes one report + BibTeX.</p>
            <p>• Same pattern in Hermes: 3 <code>delegate_task</code> calls → one literature matrix.</p>
          </div>
        </div>
        <p style="margin-top:0.5em; font-size:0.74em; color:#94a3b8;">Why: 10× speedup vs serial search, isolated failures, no single context overflow. Pair with <code>synthesise</code> + <code>critic</code>.</p>
      </section>

      
      <section>
        <h2>Academic Peer-Review Loop</h2>
        <p style="font-size:0.68em; color:#94a3b8; text-align:center;">From submission to camera-ready — and how Hermes shortens each cycle.</p>
        <div class="m-3">
          <div class="c c-left">
            <h3 style="color:#22D3EE;">📤 Submit</h3>
            <p>• Format to venue template (IEEE/ACM).</p>
            <p>• <code>grounded-citations</code> checks every claim links to a real source.</p>
            <p>• <code>cite</code> exports clean BibTeX/references.</p>
          </div>
          <div class="c c-left">
            <h3 style="color:#A855F7;">🔍 Review</h3>
            <p>• Editors assign 2–3 anonymous reviewers.</p>
            <p>• <code>critic</code> pre-empts weaknesses before submission.</p>
            <p>• <code>factcheck</code> flags unsupported claims.</p>
          </div>
          <div class="c c-left">
            <h3 style="color:#30D158;">✏️ Revise</h3>
            <p>• Address each point (accept / rebut).</p>
            <p>• <code>deepdive</code> gathers new evidence for gaps.</p>
            <p>• <code>synthesise</code> merges reviewer feedback.</p>
          </div>
        </div>
        <p style="margin-top:0.6em; font-size:0.74em; color:#94a3b8;">Loop repeats per round (R1 → R2 → …) until <strong>accept</strong>; then camera-ready + <code>research-paper-writing</code> polish. Average: 2–4 months per round.</p>
      </section>

      
      <section>
        <h2>Second Brain: Obsidian &times; Hermes</h2>
        <p style="font-size:0.66em; color:#94a3b8; text-align:center;">Turn your notes into a queryable, agent-editable knowledge base.</p>
        <div class="m-2">
          <div class="c c-left">
            <h3 style="color:#22D3EE;">🧠 Connect Obsidian</h3>
            <p>• Vault = plain markdown; Hermes reads/writes via the <code>obsidian</code> skill.</p>
            <p>• Path from <code>OBSIDIAN_VAULT_PATH</code> or <code>~/Documents/Obsidian Vault</code>.</p>
            <p>• Use <code>[[wikilinks]]</code> + YAML frontmatter (tags, aliases) for structure.</p>
            <p>• Two-way sync: edit in Obsidian, Hermes sees it next turn.</p>
          </div>
          <div class="c c-left">
            <h3 style="color:#A855F7;">🔌 Hermes skills for your vault</h3>
            <p>• <code>obsidian</code> — search, read, create, edit notes & wikilinks.</p>
            <p>• <code>llm-wiki</code> — build interlinked markdown KB.</p>
            <p>• <code>synthesise</code> — merge notes into one.</p>
            <p>• <code>cite</code> — attach BibTeX to literature notes.</p>
            <p>• <code>factcheck</code> / <code>grounded-citations</code> — verify before saving.</p>
          </div>
        </div>
        <p style="margin-top:0.5em; font-size:0.72em; color:#94a3b8;">Flow: capture → Hermes tags & links → query with <code>search_files</code> → surface in <code>deepdive</code> / <code>literature-review</code>. Your second brain, always current.</p>
      </section>

      
      <section>
        <h2>Google Opal <span class="tag">Experiment</span></h2>
        <p style="font-size:0.66em; color:#94a3b8; text-align:center;">Google's experimental AI app platform — verified facts only; function not yet documented publicly.</p>
        <div class="m-2">
          <div class="c c-left">
            <h3 style="color:#22D3EE;">🔎 What is confirmed</h3>
            <p>• Official Google product labelled <strong>"Opal [Experiment]"</strong>.</p>
            <p>• Web app (opal.google) loading in a sandboxed iframe.</p>
            <p>• Requires <strong>Google sign-in</strong> (OAuth) to use.</p>
            <p>• Requests <strong>camera &amp; microphone</strong> permissions.</p>
          </div>
          <div class="c c-left">
            <h3 style="color:#A855F7;">❓ Not yet public</h3>
            <p>• Exact purpose / feature set is not in the page source.</p>
            <p>• Positioned in Google's "experiments" track (like Labs).</p>
            <p>• Likely an AI app-/agent-building surface — <em>unconfirmed</em>.</p>
            <p>• Check <a href="https://opal.google" style="color:#38bdf8; text-decoration:underline;">opal.google</a> after sign-in for live capability.</p>
          </div>
        </div>
        <p style="margin-top:0.5em; font-size:0.72em; color:#94a3b8;">Hermes angle: if Opal is an app/agent builder, it parallels <code>skill_manage</code> (custom skills) &amp; <code>delegate_task</code> (subagents) — but treat as speculation until docs ship.</p>
      </section>

      
      <section>
        <h1>The New Research Stack</h1>
        <div style="text-align:left; max-width:820px; margin:0.8em auto; font-size:0.88em; line-height:1.7;">
          <p>✔ <strong>Act, don't just answer</strong>: agents sweep, reproduce, draft & verify.</p>
          <p>✔ <strong>Verifiable by default</strong>: citation finders &amp; Trust Cards kill hallucinated refs.</p>
          <p>✔ <strong>Evidence-first writing</strong>: methods → results → figures → tables → discussion → intro → abstract.</p>
          <p>✔ <strong>Parallel &amp; persistent</strong>: swarms via <code>delegate_task</code>, memory + Obsidian second brain.</p>
        </div>
        <p style="margin-top:1.1em; color:#22D3EE; font-size:1.05em; font-weight:bold;">Explore the tooling &amp; code: pirahansiah.com</p>
      </section>

      
      <section>
        <h2>Validated Skills Library <span class="tag">installed &amp; scanned</span></h2>
        <p style="font-size:0.6em; color:#94a3b8;">All installed via <code>hermes skills install</code>, security-scanned, and verified (valid SKILL.md, enabled).</p>
        <div class="m-3">
          <div class="c"><h3 style="color:#38bdf8;">Web &amp; Research</h3><p style="font-size:0.6em;">agent-reach · youtube-full · defuddle · resemble-detect</p></div>
          <div class="c"><h3 style="color:#a855f7;">Build &amp; Engineering</h3><p style="font-size:0.6em;">using-agent-skills · setup-matt-pocock-skills · make-interfaces-feel-better · humanizer</p></div>
          <div class="c"><h3 style="color:#22d3ee;">Agents &amp; Ops</h3><p style="font-size:0.6em;">browser-harness · i-have-adhd · loopy · loop-library · skillclaw</p></div>
        </div>
        <div class="code-box" style="font-size:0.56em; margin-top:10px;">
<span class="cmt"># list active skills</span>
hermes skills list
<span class="cmt"># 14 validated community/url skills now active</span>
        </div>
      </section>

      
      <section>
        <h2>Command Cheat Sheet <span class="tag">DESK · CLI · MSG · SHELL</span></h2>
        <p style="font-size:0.5em; color:#94a3b8;">Everyday commands — Desktop, CLI chat, messaging, shell. (Verified vs current Hermes source, Sep 2026.)</p>
        <div class="m-3">
          <div class="c"><h3 style="color:#38bdf8;">Sessions &amp; Context</h3><p style="font-size:0.55em;">/new · /resume · /sessions · /title · /branch · /compress · /context · /status</p></div>
          <div class="c"><h3 style="color:#38bdf8;">Control Work</h3><p style="font-size:0.55em;">/queue · /steer · /bg · /btw · /agents · /stop</p></div>
          <div class="c"><h3 style="color:#38bdf8;">Goals, Loops &amp; Plans</h3><p style="font-size:0.55em;">/goal · /subgoal · /heartbeat · /loop · /plan · /review · /refine</p></div>
          <div class="c"><h3 style="color:#a855f7;">Models &amp; Behavior</h3><p style="font-size:0.55em;">/model · /moa · /personality · /reasoning · /fast · /approvals · /yolo · /busy · /voice</p></div>
          <div class="c"><h3 style="color:#a855f7;">Skills, Memory &amp; Tools</h3><p style="font-size:0.55em;">/skills · /learn · /memory · /init · /tools · /browser</p></div>
          <div class="c"><h3 style="color:#a855f7;">Automation &amp; Coord</h3><p style="font-size:0.55em;">/cron · /suggestions · /blueprint · /kanban</p></div>
          <div class="c"><h3 style="color:#22d3ee;">Inspect, Recover &amp; Fix</h3><p style="font-size:0.55em;">/retry · /undo · /save · /diff · /rollback · /usage · /debug · /help</p></div>
          <div class="c"><h3 style="color:#f472b6;">Messaging / Gateway</h3><p style="font-size:0.55em;">/sethome · /topic · /commands · /approve · /deny · /pause · /platform · /restart</p></div>
          <div class="c"><h3 style="color:#22d3ee;">Terminal Essentials</h3><p style="font-size:0.55em;">hermes / hermes chat · -z "prompt" · model · status · doctor · gateway status · --safe-mode · update</p></div>
        </div>
        <div class="code-box" style="font-size:0.52em; margin-top:8px;">
<span class="cmt"># repeat-work modes</span>
/goal  = work until objective met   /loop  = repeat w/ stop conditions
/heartbeat = one recurring check    /cron  = durable schedule outside chat
<span class="cmt"># type / + letters for autocomplete; /help for full list</span>
        </div>
      </section>

      
      <section>
        <h1>Thank You & Discussion</h1>
        <h2 style="color:#cbd5e1;">The New Era of Research Tools</h2>
        <p style="margin-top:1.5em;">
          <a href="https://www.pirahansiah.com/notes/slides/" style="color:#38bdf8; text-decoration:underline;">All Presentations</a> •
          <a href="https://github.com/pirahansiah" style="color:#38bdf8; text-decoration:underline;">GitHub Repositories</a>
        </p>
        <div style="margin-top:2em;">
          <button id="restart-btn" style="background:rgba(34,211,238,0.2); color:#22D3EE; border:1px solid #22D3EE; padding:12px 24px; border-radius:10px; cursor:pointer; font-size:0.9em; font-weight:bold;">
            🔄 Restart Presentation
          </button>
        </div>
      </section>

    </div>
  </div>
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